2021

Marc Golub, Rafael Neto Henriques, Rita Gouveia Nunes (2021) Free-water DTI estimates from single b-value data might seem plausible but must be interpreted with care, Magnetic Resonance in Medicine 85(5), p. 2537-2551, doi:10.1002/mrm.28599

Rodolfo Abreu, João Jorge, Alberto Leal, Thomas Koenig, Patrícia Figueiredo (2021) EEG Microstates Predict Concurrent fMRI Dynamic Functional Connectivity States, Brain Topography 34(1), p. 41-55, Springer, url, doi:10.1007/s10548-020-00805-1

Joana Pinto, Molly G. Bright, Daniel P. Bulte, Patrícia Figueiredo (2021) Cerebrovascular Reactivity Mapping Without Gas Challenges: A Methodological Guide, Frontiers in Physiology 11, Frontiers Media S.A., url, doi:10.3389/fphys.2020.608475

D. Blanco-Mora, A. Aldridge, C. Jorge, A. Vourvopoulos, P. Figueiredo, S. Bermúdez i Badia (2021) Finding the Optimal Time Window for Increased Classification Accuracy during Motor Imagery, Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, p. 144-151, SCITEPRESS - Science and Technology Publications, url, doi:10.5220/0010316101440151

Yeray González-Zamorano, Josué Fernández-Carnero, Francisco José Sánchez-Cuesta, Aida Arroyo-Ferrer, Athanasios Vourvopoulos, Patricia Figueiredo, José Ignacio Serrano, Juan Pablo Romero (2021) New Approaches Based on Non-Invasive Brain Stimulation and Mental Representation Techniques Targeting Pain in Parkinson's Disease Patients: Two Study Protocols for Two Randomized Controlled Trials, Brain Sciences 2021, Vol. 11, Page 65 11(1), p. 65, Multidisciplinary Digital Publishing Institute, url, doi:10.3390/brainsci11010065

Floriana Accoto, Athanasios Vourvopoulos, Afonso Gonçalves, Teresa Bucho, Gina Caetano, Patrícia Figueiredo, Lucio De Paolis, Sergi Bermudez i Badia (2021) The Effect of Neurofeedback Training in CAVE-VR for Enhancing Working Memory, Technology-Augmented Perception and Cognition, p. 11-45, Springer, Cham, url, doi:10.1007/978-3-030-30457-7_2

2020

Patricia Clement, Thomas Booth, Fran Borovečki, Kyrre E. Emblem, Patrícia Figueiredo, Lydiane Hirschler, Radim Jančálek, Vera C. Keil, Camille Maumet, Yelda Özsunar, Cyril Pernet, Jan Petr, Joana Pinto, Marion Smits, Esther A.H. Warnert (2020) GliMR: Cross-Border Collaborations to Promote Advanced MRI Biomarkers for Glioma, Journal of Medical and Biological Engineering, p. 1-11, Springer Science and Business Media Deutschland GmbH, url, doi:10.1007/s40846-020-00582-z

Athanasios Vourvopoulos, Simon Legeay, Patricia Figueiredo (2020) NeuXus: A Biosignal Processing and Classification Pipeline for Real-Time Brain-Computer Interaction, url

Diogo De Andrade, Nuno Fachada, Carlos M Fernandes, Agostinho C Rosa (2020) Generative Art with Swarm Landscapes, Entropy 22(11), p. 1284, url, doi:10.3390/e22111284

Felix Putze, Athanasios Vourvopoulos, Anatole Lécuyer, Dean Krusienski, Sergi Bermúdez i Badia, Timothy Mullen, Christian Herff (2020) Editorial: Brain-Computer Interfaces and Augmented/Virtual Reality, Frontiers in Human Neuroscience 14, p. 144, Frontiers Media S.A., url, doi:10.3389/fnhum.2020.00144

Janir Ramos da Cruz, Ophélie Favrod, Maya Roinishvili, Eka Chkonia, Andreas Brand, Christine Mohr, Patrícia Figueiredo, Michael H. Herzog (2020) EEG microstates are a candidate endophenotype for schizophrenia, Nature Communications 11(1), p. 1-11, Nature Research, url, doi:10.1038/s41467-020-16914-1

Janir R. da Cruz, Albulena Shaqiri, Maya Roinishvili, Ophélie Favrod, Eka Chkonia, Andreas Brand, Patrícia Figueiredo, Michael H. Herzog (2020) Neural Compensation Mechanisms of Siblings of Schizophrenia Patients as Revealed by High-Density EEG, Schizophrenia bulletin 46(4), p. 1009-1018, NLM (Medline), url, doi:10.1093/schbul/sbz133

Ana R. Oliveira, Rita G. Nunes, Patrícia Figueiredo, Ana I. Dias, Alberto Leal (2020) Regional White Matter Atrophy Correlates with Spike Activity in Encephalopathy Related to Status Epilepticus During Slow Sleep (ESES) After Early Thalamic Lesions, Brain Topography 33(5), p. 571-585, Springer, url, doi:10.1007/s10548-020-00784-3

Seema S. Bhat, Tiago T. Fernandes, Pavan Poojar, Marta da Silva Ferreira, Padma Chennagiri Rao, Madigondanahalli Chikkamaraiah Hanumantharaju, Godwin Ogbole, Rita G. Nunes, Sairam Geethanath, Marta Silva Ferreira, Padma Chennagiri Rao, Madigondanahalli Chikkamaraiah Hanumantharaju, Godwin Ogbole, Rita G. Nunes, Sairam Geethanath (2020) Low-Field MRI of Stroke: Challenges and Opportunities., Journal of magnetic resonance imaging : JMRI, p. e27324, Wiley, doi:10.1002/jmri.27324

Joao Leote, Ricardo Loução, Catarina Viegas, Martin Lauterbach, António Perez-Hick, Joana Monteiro, Rita G Nunes, Hugo A Ferreira (2020) Impact of Navigated Task-specific fMRI on Direct Cortical Stimulation., Journal of neurological surgery. Part A, Central European neurosurgery, doi:10.1055/s-0040-1712496

Ricardo Leitão, Carla Guerreiro, Rita G Nunes, Nilza Gonçalves, Giulia Galati, Madalena Rosário, Leonor Correia Guedes, Joaquim J Ferreira, Sofia Reimão (2020) Neuromelanin Magnetic Resonance Imaging of the Substantia Nigra in Huntington's Disease., Journal of Huntington's disease 9(2), p. 143-148, doi:10.3233/JHD-190388

Joao Leote, Rita G Nunes, Hugo A Ferreira (2020) Editorial on "Improved Quantification of Myelin Water Fraction Using Joint Sparsity of T(2) * Distribution"., Journal of magnetic resonance imaging : JMRI 52(1), p. 159-160, doi:10.1002/jmri.27068

Luísa Nogueira, Rita Gouveia Nunes (2020) Editorial for “Radiomics Based on Multimodal MRI for the Differential Diagnosis of Benign and Malignant Breast Lesions”, Journal of Magnetic Resonance Imaging 52(2), p. 608-609, John Wiley and Sons Inc., doi:10.1002/jmri.27168

Nuno Fachada, Agostinho C. Rosa (2020) generateData—A 2D data generator, Software Impacts 4, p. 100017, url, doi:10.1016/j.simpa.2020.100017

Carlos M. Fernandes, Nuno Fachada, Juan L.J. Laredo, J.J. Merelo, Agostinho C. Rosa (2020) Population Sizing of Cellular Evolutionary Algorithms, Swarm and Evolutionary Computation, p. 100721, url, doi:10.1016/j.swevo.2020.100721

Joana Pinto, Michael A. Chappell, Thomas W. Okell, Melvin Mezue, Andrew R. Segerdahl, Irene Tracey, Pedro Vilela, Patrícia Figueiredo (2020) Calibration of arterial spin labeling data—potential pitfalls in post-processing, Magnetic Resonance in Medicine 83(4), p. 1222-1234, url, doi:10.1002/mrm.28000

2019

Matthieu Ruthven, Andreia C. Freitas, Redha Boubertakh, Marc E. Miquel (2019) Application of radial GRAPPA techniques to single‐ and multislice dynamic speech MRI using a 16‐channel neurovascular coil, Magnetic Resonance in Medicine 82(3), p. 948-958, url, doi:doi.org/10.1002/mrm.27779

Andreia S Gaspar, Rita G Nunes, Giulio Ferrazzi, Emer J Hughes, Jana Hutter, Shaihan J Malik, Laura McCabe, Kelly P Baruteau, Mary A Rutherford, Joseph V Hajnal, Anthony N Price (2019) Optimizing maternal fat suppression with constrained image-based shimming in fetal MR., Magnetic resonance in medicine 81(1), p. 477-485, doi:10.1002/mrm.27375

Carlos M. Fernandes, Nuno Fachada, Juan-Julián Merelo, Agostinho C. Rosa (2019) Steady state particle swarm, PeerJ Computer Science 5, p. e202, url, doi:10.7717/peerj-cs.202

Rodolfo Abreu, Alberto Leal, Patrícia Figueiredo (2019) Identification of epileptic brain states by dynamic functional connectivity analysis of simultaneous EEG-fMRI: a dictionary learning approach, Scientific Reports 9(1), url, doi:10.1038/s41598-018-36976-y

Ophélie Favrod, Janir R. da Cruz, Maya Roinishvili, Ekaterine Berdzenishvili, Andreas Brand, Patrícia Figueiredo, Michael H. Herzog, Eka Chkonia (2019) Electrophysiological correlates of visual backward masking in patients with major depressive disorder, Psychiatry Research - Neuroimaging 294, Elsevier Ireland Ltd, doi:10.1016/j.pscychresns.2019.111004

Teresa Bucho, Gina Caetano, Athanasios Vourvopoulos, Floriana Accoto, Ines Esteves, Sergi Bermudez I Badia, Agostinho Rosa, Patricia Figueiredo (2019) Comparison of Visual and Auditory Modalities for Upper-Alpha EEG-Neurofeedback, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, p. 5960-5966, Institute of Electrical and Electronics Engineers Inc., doi:10.1109/EMBC.2019.8856671

Athanasios Vourvopoulos, Evangelos Niforatos, Michail Giannakos (2019) EEGlass: An EEG-eyeware prototype for ubiquitous brain-computer interaction, UbiComp/ISWC 2019- - Adjunct Proceedings of the 2019 ACM International Joint Conference on Pervasive and Ubiquitous Computing and Proceedings of the 2019 ACM International Symposium on Wearable Computers, p. 647-652, New York, New York, USA: Association for Computing Machinery, Inc, url, doi:10.1145/3341162.3348383

Athanasios Vourvopoulos, Carolina Jorge, Rodolfo Abreu, Patrícia Figueiredo, Jean-Claude Fernandes, Sergi i Badia (2019) Efficacy and Brain Imaging Correlates of an Immersive Motor Imagery BCI-Driven VR System for Upper Limb Motor Rehabilitation: A Clinical Case Report, Frontiers in Human Neuroscience 13, p. 244, url, doi:10.3389/fnhum.2019.00244

2018

Nuno Fachada, Agostinho C Rosa (2018) micompm: A MATLAB/Octave toolbox for multivariate independent comparison of observations, The Journal of Open Source Software 3(23), p. 430, doi:10.21105/joss.00430

Nuno Adubeiro, Maria Luísa Nogueira, Rita G. Nunes, Hugo Alexandre Ferreira, Eduardo Ribeiro, José Maria Ferreira La Fuente (2018) Apparent diffusion coefficient in the analysis of prostate cancer: determination of optimal b-value pair to differentiate normal from malignant tissue., Clinical Imaging 47, p. 90-95, doi:10.1016/j.clinimag.2017.09.004

Marta Tavares, Sofia Reimão, Inês Chendo, Miguel Carvalho, Pedro Levy, Rita G. Nunes (2018) Neuromelanin magnetic resonance imaging of the substantia nigra in first episode psychosis patients consumers of illicit substances., Schizophrenia research 197, p. 620-621, url, doi:10.1016/j.schres.2018.02.033

Joao Leote, Juan M Castellote, Jordi Casanova-Molla, Judith Navarro-Otano, Rita G Nunes, Hugo A Ferreira, Josep Valls-Sole (2018) Motor preparation in picture naming tasks., Brain and language 180-182, p. 24-30, doi:10.1016/j.bandl.2018.04.002

Rita G. Nunes, Joseph V. Hajnal (2018) Distortion correction of echo planar images applying the concept of finite rate of innovation to point spread function mapping (FRIP), Magnetic Resonance Materials in Physics, Biology and Medicine 31(3), p. 449-456, Springer Verlag, doi:10.1007/s10334-017-0669-1

Rita G. Nunes, Giulio Ferrazzi, Anthony N. Price, Jana Hutter, Andreia S. Gaspar, Mary A. Rutherford, Joseph V. Hajnal (2018) Inner-volume echo volumar imaging (IVEVI) for robust fetal brain imaging, Magnetic Resonance in Medicine 80(1), p. 279-285, doi:10.1002/mrm.26998

Joao Leote, Rita G. Nunes, Luis Cerqueira, Ricardo Loução, Hugo A. Ferreira (2018) Reconstruction of white matter fibre tracts using diffusion kurtosis tensor imaging at 1.5T: Pre-surgical planning in patients with gliomas, European Journal of Radiology Open 5, p. 20-23, doi:10.1016/j.ejro.2018.01.002

Carlos M. Fernandes, Agostinho C. Rosa, Nuno Fachada, J. L. J. Laredo, J. J. Merelo (2018) Particle swarm and population structure, Proceedings of the Genetic and Evolutionary Computation Conference Companion on - GECCO '18, p. 85-86, New York, New York, USA: ACM Press, url, doi:10.1145/3205651.3205779

Carlos M. Fernandes, Nuno Fachada, Juan L. J. Laredo, Juan Julian Merelo, Pedro A. Castillo, Agostinho Rosa (2018) Revisiting Population Structure and Particle Swarm Performance, Proceedings of the 10th International Joint Conference on Computational Intelligence 1, p. 248-254, SCITEPRESS - Science and Technology Publications, url, doi:10.5220/0006959502480254

Ophélie Favrod, Maya Roinishvili, Janir R. da Cruz, Andreas Brand, Mariam Okruashvili, Tinatin Gamkrelidze, Patrícia Figueiredo, Michael H Herzog, Eka Chkonia, Albulena Shaqiri (2018) Electrophysiological correlates of visual backward masking in patients with first episode psychosis, Psychiatry Research - Neuroimaging 282, p. 64-72, url, doi:10.1016/j.pscychresns.2018.10.008

Janir Ramos da Cruz, Vitaly Chicherov, Michael H. Herzog, Patrícia Figueiredo (2018) An automatic pre-processing pipeline for EEG analysis (APP) based on robust statistics, Clinical Neurophysiology 129(7), p. 1427-1437, Elsevier Ireland Ltd, doi:10.1016/j.clinph.2018.04.600

Ophélie Favrod, Maya Roinishvili, Janir R. da Cruz, Andreas Brand, Mariam Okruashvili, Tinatin Gamkrelidze, Patrícia Figueiredo, Michael H Herzog, Eka Chkonia, Albulena Shaqiri (2018) Electrophysiological correlates of visual backward masking in patients with first episode psychosis, Psychiatry Research - Neuroimaging 282, p. 64-72, url, doi:10.1016/j.pscychresns.2018.10.008

Rodolfo Abreu, Alberto Leal, Fernando Lopes da Silva, Patrícia Figueiredo (2018) EEG synchronization measures predict epilepsy-related BOLD-fMRI fluctuations better than commonly used univariate metrics, Clinical Neurophysiology 129(3), p. 618-635, Elsevier Ireland Ltd, doi:10.1016/j.clinph.2017.12.038

Rodolfo Abreu, Alberto Leal, Patrícia Figueiredo (2018) EEG-informed fMRI: A review of data analysis methods, Frontiers in Human Neuroscience 12, Frontiers Media S. A, doi:10.3389/fnhum.2018.00029

2017

Sofia Brandão, Marco Parente, Elisabete Silva, Thuane Da Roza, Teresa Mascarenhas, João Leitão, João Cunha, Renato Natal Jorge, Rita Gouveia Nunes (2017) Pubovisceralis Muscle Fiber Architecture Determination: Comparison Between Biomechanical Modeling and Diffusion Tensor Imaging, Annals of biomedical engineering 45(5), p. 1255-1265, doi:10.1007/s10439-016-1788-y

Leonor Correia Guedes, Sofia Reimão, Patrícia Paulino, Rita G. Nunes, Raquel Bouça-Machado, Daisy Abreu, Nilza Gonçalves, Tiago Soares, Margherita Fabbri, Catarina Godinho, Patrícia Pita Lobo, Dulce Neutel, Marialuisa Quadri, Miguel Coelho, Mario M. Rosa, Jorge Campos, Tiago F. Outeiro, Cristina Sampaio, Vincenzo Bonifati, Joaquim J. Ferreira (2017) Neuromelanin magnetic resonance imaging of the substantia nigra in LRRK2-related Parkinson's disease, Movement Disorders 32(9), p. 1331-1333, doi:10.1002/mds.27083

Margherita Fabbri, Sofia Reimão, Miguel Carvalho, Rita G Nunes, Daisy Abreu, Leonor Correia Guedes, Raquel Bouça, Patricia P Lobo, Catarina Godinho, Miguel Coelho, Nilza C Gonçalves, Mario Miguel Rosa, Angelo Antonini, Joaquim J Ferreira (2017) Substantia Nigra Neuromelanin as an Imaging Biomarker of Disease Progression in Parkinson's Disease., Journal of Parkinson's disease, p. 1-11, url, doi:10.3233/JPD-171135

Nuno Fachada, Vitor V Lopes, Rui C Martins, Agostinho C Rosa (2017) Model-independent comparison of simulation output, Simulation Modelling Practice and Theory, doi:10.1016/j.simpat.2016.12.013

Nuno Fachada, Vitor V. Lopes, Rui C. Martins, Agostinho C. Rosa (2017) cf4ocl: A C framework for OpenCL, Science of Computer Programming 143, p. 9-19, url, doi:10.1016/j.scico.2017.03.005

Nuno Fachada, Agostinho C. Rosa (2017) Assessing the feasibility of OpenCL CPU implementations for agent-based simulations, Proceedings of the 5th International Workshop on OpenCL - IWOCL 2017 4, p. 1-10, New York, New York, USA: ACM Press, url, doi:10.1145/3078155.3078174

N. Fachada, V.V. Lopes, R.C. Martins, A.C. Rosa (2017) Parallelization Strategies for Spatial Agent-Based Models, International Journal of Parallel Programming 45(3), p. 449–481, doi:10.1007/s10766-015-0399-9

Nuno David, Nuno Fachada, Agostinho C. Rosa (2017) Verifying and Validating Simulations, Simulating Social Complexity, p. 173-204, url, doi:10.1007/978-3-319-66948-9_9

Rodolfo Abreu, Sandro Nunes, Alberto Leal, Patrícia Figueiredo (2017) Physiological noise correction using ECG-derived respiratory signals for enhanced mapping of spontaneous neuronal activity with simultaneous EEG-fMRI, NeuroImage 154, p. 115-127, Academic Press Inc., doi:10.1016/j.neuroimage.2016.08.008

Joana Pinto, Sandro Nunes, Marta Bianciardi, Afonso Dias, L. Miguel Silveira, Lawrence L. Wald, Patrícia Figueiredo (2017) Improved 7 Tesla resting-state fMRI connectivity measurements by cluster-based modeling of respiratory volume and heart rate effects, NeuroImage 153, p. 262-272, Academic Press Inc., doi:10.1016/j.neuroimage.2017.04.009

2016

Nuno Fachada, João Rodrigues, Vitor V. Lopes, Rui C. Martins, Agostinho C. Rosa (2016) micompr: An R Package for Multivariate Independent Comparison of Observations, The R Journal 8(2), p. 405-420, url, doi:10.32614/RJ-2016-055

Nuno Fachada, Vitor V. Lopes, Rui C. Martins, Agostinho C. Rosa (2016) PerfAndPubTools – Tools for Software Performance Analysis and Publishing of Results, Journal of Open Research Software 4(1), p. e18, url, doi:10.5334/jors.115

Nuno Fachada, Vitor V Lopes, Rui C Martins, Agostinho C Rosa (2016) SimOutUtils – Utilities for Analyzing Time Series Simulation Output, Journal of Open Research Software, doi:10.5334/jors.110

T Murta, L Hu, T Tierney, U J Chaudhary, M C Walker, D W Carmichael, P Figueiredo, L Lemieux (2016) A study of the electro-haemodynamic coupling using simultaneously acquired intracranial EEG and fMRI data in humans., url

C A Gomes, P Figueiredo, A Mayes (2016) Priming for novel object associations: Neural differences from object item priming and equivalent forms of recognition, Hippocampus, url, doi:10.1002/hipo.22537

Alberto Leal, José P Vieira, Ricardo Lopes, Rita G Nunes, Sónia I Gonçalves, Fernando Lopes da Silva, Patrícia Figueiredo (2016) Dynamics of epileptic activity in a peculiar case of childhood absence epilepsy and correlation with thalamic levels of GABA, Epilepsy and Behavior Case Reports 5, p. 57-65, url, doi:10.1016/j.ebcr.2016.03.004

Gruetter R Jorge J, Grouiller F, Cotič P, van der Zwaag W, Figueiredo P (2016) EEG-fMRI at 7T using simultaneous multislice 2D-EPI for increased temporal resolution: safety and functional sensitivity at the single-subject level., Proc. 24th Annual Meeting of the International Society for Magnetic Resonance in Medicine

Teresa Murta, UJ Chaudhary, T Tierney, A Dias, M Leite, DW Carmichael, P Figueiredo, L Lemieux (2016) Phase-amplitude coupling and the BOLD signal: A simultaneous intracranial EEG (icEEG) - fMRI study in humans performing a finger-tapping task, NeuroImage (under review)

Alberto Leal, José P Vieira, Ricardo Lopes, Rita G Nunes, Sónia I Gonçalves, Fernando Lopes da Silva, Patrícia Figueiredo (2016) Dynamics of epileptic activity in a peculiar case of childhood absence epilepsy and correlation with thalamic levels of GABA, Epilepsy and Behavior Case Reports 5, p. 57-65, url, doi:10.1016/j.ebcr.2016.03.004

S Nunes, M Bianciardi, A Dias, L M Silveira, L L Wald, P Figueiredo (2016) Physiological noise model comparison for resting-state fMRI at 7 T, Proceedings - International Symposium on Biomedical Imaging, url, doi:10.1109/ISBI.2016.7493434

Figueiredo P Nunes S, Bianciardi M, Dias A, Silveira LM, Wald LL (2016) Regional optimization of physiological noise models improves functional connectivity measurements in resting-state fMRI at 7T., Proc. 24th Annual Meeting of the International Society for Magnetic Resonance in Medicine

Joana Pinto, João Jorge, Inês Sousa, Pedro Vilela, Patrícia Figueiredo (2016) Fourier modeling of the BOLD response to a breath-hold task: Optimization and reproducibility, NeuroImage 135, p. 223-231, url, doi:10.1016/j.neuroimage.2016.02.037

Rodolfo Abreu, Marco Leite, João Jorge, Frédéric Grouiller, Wietske van der Zwaag, Alberto Leal, Patrícia Figueiredo (2016) Ballistocardiogram artifact correction taking into account physiological signal preservation in simultaneous EEG-fMRI., NeuroImage 135, p. 45-63, Elsevier Inc., url, doi:10.1016/j.neuroimage.2016.03.034

T Murta, L Hu, T M Tierney, U J Chaudhary, M C Walker, D W Carmichael, P Figueiredo, L Lemieux (2016) A study of the electro-haemodynamic coupling using simultaneously acquired intracranial EEG and fMRI data in humans, NeuroImage 142, p. 371-380, url, doi:10.1016/j.neuroimage.2016.08.001

Rodolfo Abreu, Marco Leite, Alberto Leal, Patrícia Figueiredo (2016) Objective selection of epilepsy-related independent components from EEG data, Journal of Neuroscience Methods 258, p. 67-78, Elsevier, doi:10.1016/J.JNEUMETH.2015.10.003

2015

Nuno Fachada, Vitor V. Lopes, Rui C. Martins, Agostinho C. Rosa (2015) Towards a standard model for research in agent-based modeling and simulation, PeerJ Computer Science 1, p. e36, url, doi:10.7717/peerj-cs.36

P. Os??rio, P. Rosa, C. Silvestre, P. Figueiredo (2015) Stochastic dynamic causal modelling of fMRI data with multiple-model kalman filters, Methods of Information in Medicine 54(3), p. 232-239, doi:10.3414/ME13-02-0052

Sandro Nunes, Marta Bianciardi, Afonso Dias, Rodolfo Abreu, J Rodrigues, Luis M. Silveira, Lawrence L. Wald, Patrícia Figueiredo (2015) Subject-specific modeling of physiological noise in resting-state fMRI at 7T, International Society of Magnetic Resonance in Medicine (ISMRM), p. 23

João Jorge, Frédéric Grouiller, Rolf Gruetter, Wietske van der Zwaag, Patrícia Figueiredo (2015) Towards high-quality simultaneous EEG-fMRI at 7T: Detection and reduction of EEG artifacts due to head motion., NeuroImage 120, p. 143-153, Elsevier Inc., url, doi:10.1016/j.neuroimage.2015.07.020

Paulo N Rosa, Patricia Figueiredo, Carlos J Silvestre (2015) On the distinguishability of HRF models in fMRI, Frontiers in Computational Neuroscience 9(MAY), url, doi:10.3389/fncom.2015.00054

Carlos Alexandre Gomes, Patrícia Figueiredo, Andrew Mayes (2015) Priming for novel object associations: Neural differences from object item priming and equivalent forms of recognition, Hippocampus 491, p. 472-491, doi:10.1002/hipo.22537

A Dias, M Bianciardi, S Nunes, R Abreu, J Rodrigues, L M Silveira, L L Wald, P Figueiredo (2015) A new hierarchical brain parcellation method based on discrete morse theory for functional MRI data, IEEE 12th International Symposium on Biomedical Imaging, p. 1336-1339

Teresa Murta, Marco Leite, David W. Carmichael, Patr??cia Figueiredo, Louis Lemieux (2015) Electrophysiological correlates of the BOLD signal for EEG-informed fMRI, Human Brain Mapping 36(1), p. 391-414, doi:10.1002/hbm.22623

João Jorge, Frédéric Grouiller, Özlem Ipek, Robert Stoermer, Christoph M. Michel, Patrícia Figueiredo, Wietske Van Der Zwaag, Rolf Gruetter (2015) Simultaneous EEG-fMRI at ultra-high field: Artifact prevention and safety assessment, NeuroImage 105, p. 132-144, Academic Press Inc.

A C Leitão, A P Francisco, R Abreu, S Nunes, J Rodrigues, P Figueiredo, L L Wald, M Bianciardi, L M Silveira (2015) Techniques for brain functional connectivity analysis from high resolution imaging, Studies in Computational Intelligence, url, doi:10.1007/978-3-319-16112-9_13

Rodolfo Abreu, Marco Leite, Alberto Leal, Patricia Figueiredo (2015) STTICS: A template-based algorithm for the objective selection of epilepsy-related EEG ICA components, Proceedings - International Symposium on Biomedical Imaging 2015-July, p. 343-346, doi:10.1109/ISBI.2015.7163883

2014

N. Fachada, M.A.T. Figueiredo, V.V. Lopes, R.C. Martins, A.C. Rosa (2014) Spectrometric differentiation of yeast strains using minimum volume increase and minimum direction change clustering criteria, Pattern Recognition Letters 45(1), doi:10.1016/j.patrec.2014.03.008

Ines Sousa, Pedro Vilela, Patrícia Figueiredo (2014) Reproducibility of the quantification of arterial and tissue contributions in multiple postlabeling delay arterial spin labeling, Journal of Magnetic Resonance Imaging 40(6), p. 1453-1462, doi:10.1002/jmri.24493

Ines Sousa, Pedro Vilela, Patrícia Figueiredo (2014) Reproducibility of the quantification of arterial and tissue contributions in multiple postlabeling delay arterial spin labeling, Journal of Magnetic Resonance Imaging 40(6), p. 1453-1462, doi:10.1002/jmri.24493

J Jorge, W Van der Zwaag, P Figueiredo (2014) EEG-fMRI integration for the study of human brain function, NeuroImage, url, doi:10.1016/j.neuroimage.2013.05.114

Sven Rothlübbers, Vânia Relvas, Alberto Leal, Teresa Murta, Louis Lemieux, Patrícia Figueiredo (2014) Characterisation and Reduction of the EEG Artefact Caused by the Helium Cooling Pump in the MR Environment: Validation in Epilepsy Patient Data, Brain Topography 28(2), p. 208-220, url, doi:10.1007/s10548-014-0408-0

Inês Sousa, Pedro Vilela, Patrícia Figueiredo (2014) Reproducibility of hypocapnic cerebrovascular reactivity measurements using BOLD fMRI in combination with a paced deep breathing task, NeuroImage 98, p. 31-41, Academic Press Inc.

2013

J Jorge, P Figueiredo, W van der Zwaag, J P Marques (2013) Signal fluctuations in fMRI data acquired with 2D-EPI and 3D-EPI at 7 Tesla, Magnetic Resonance Imaging, url, doi:10.1016/j.mri.2012.07.001

Vânia Relvas, J Miguel Sanches, Patrícia Figueiredo (2013) Scalp EEG continuous space ERD/ERS quantification, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7887 LNCS, p. 616-623, url, doi:10.1007/978-3-642-38628-2_73

Sven Rothlubbers, Vania Relvas, Alberto Leal, Patricia Figueiredo (2013) Reduction of EEG artefacts induced by vibration in the MR-environment, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, p. 2092-2095, url, doi:10.1109/EMBC.2013.6609945

Sven Rothlübbers, Vânia Relvas, Alberto Leal, Patrícia Figueiredo (2013) Characterization and reduction of MR-environment-related EEG artefacts, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7887 LNCS, p. 808-818, url, doi:10.1007/978-3-642-38628-2_96

Miguel L Rodrigues, Patrícia Figueiredo, João Miguel Sanches (2013) A Bayesian approach to perfusion imaging using ASL MRI, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7887 LNCS, p. 691-698, url, doi:10.1007/978-3-642-38628-2_82

Miguel L Rodrigues, Patrícia Figueiredo, João Miguel Sanches (2013) A Bayesian approach to perfusion imaging using ASL MRI, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7887 LNCS, p. 691-698, url, doi:10.1007/978-3-642-38628-2_82

Marco Leite, Alberto Leal, Patrícia Figueiredo (2013) Transfer function between EEG and BOLD signals of epileptic activity, Frontiers in Neurology 4 JAN

Marco A F Pimentel, Pedro Vilela, Inês Sousa, Patrícia Figueiredo (2013) Localization of the hand motor area by arterial spin labeling and blood oxygen level-dependent functional magnetic resonance imaging, Human Brain Mapping 34(1), p. 96-108

2012

Vasco Fachada, Nuno Fachada, Tuomas Turpeinen, Paavo Rahkila, Agostinho C. Rosa, Heikki Kainulainen (2012) TopoCell – An image analysis tool to study intracellular topography, The FASEB Journal 26(S1), p. 578.2-578.2, url

Raquel Lemos, Patr??cia Figueiredo, Isabel Santana, M??rio R. Sim??es, Miguel Castelo-Branco (2012) Temporal integration of 3D coherent motion cues defining visual objects of unknown orientation is impaired in amnestic mild cognitive impairment and Alzheimer's disease, Journal of Alzheimer's Disease 28(4), p. 885-896, doi:10.3233/JAD-2011-110719

Teresa Murta, Alberto Leal, Marta I Garrido, Patrícia Figueiredo (2012) Dynamic Causal Modelling of epileptic seizure propagation pathways: A combined EEG-fMRI study, NeuroImage 62(3), p. 1634-1642, url, doi:10.1016/j.neuroimage.2012.05.053

Paulo Rosa, Carlos Silvestre, Patricia Figueiredo (2012) Haemodynamic Response Function (HRF) model selection in fMRI using Kalman filtering, Proceedings of the American Control Conference, p. 4040-4045, url, doi:10.1109/acc.2012.6314701

Marco Leite, Patrícia Figueiredo, Alberto Leal (2012) Estimation of the haemodynamic response to epileptic activity in EEG-fMRI data, 2012 IEEE 2nd Portuguese Meeting in Bioengineering, ENBENG 2012, url, doi:10.1109/ENBENG.2012.6331398

2011

C. Isidoro, N. Fachada, F. Barata, A. Rosa (2011) Agent-based model of dengue disease transmission by Aedes aegypti populations, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5777 LNAI(PART 1), doi:10.1007/978-3-642-21283-3_43

Pedro Vilela, M Pimentel, I Sousa, P Figueiredo (2011) Quantification of perfusion changes during a motor task using arterial spin labeling, Neuroradiology Journal 24(1), p. 85-91, url, doi:10.1177/197140091102400113

Nuno Santos, J. Miguel Sanches, In??s Sousa, Patr??cia Figueiredo (2011) Optimal sampling and estimation in PASL perfusion imaging, IEEE Transactions on Biomedical Engineering 58(11), p. 3165-3174, doi:10.1109/TBME.2011.2164916

Carlos Cabral, Margarida Silveira, Patrícia Figueiredo (2011) Automatic classification of cognitive states, 1st Portuguese Meeting in Biomedical Engineering, ENBENG 2011, doi:10.1109/ENBENG.2011.6026089

Marco Leite, Alberto Leal, Patrícia Figueiredo () Using EEG metrics to predict BOLD fMRI data in epilepsy, url

2011

Carlos Silva Pereira, João Teixeira, Patrícia Figueiredo, João Xavier, São Luís Castro, Elvira Brattico (2011) Music and Emotions in the Brain: Familiarity Matters, PLoS ONE 6(11)

Teresa Murta, Patrícia Figueiredo, Alberto Leal (2011) EEG-fMRI measures of functional brain connectivity in epilepsy, 1st Portuguese Meeting in Biomedical Engineering, ENBENG 2011, doi:10.1109/ENBENG.2011.6026094

I Sousa, N Santos, J Sanches, P. Vilela, Patrícia Figueiredo (2011) Challenges for non-invasive brain perfusion quantification using arterial spin labeling, Neuroradiology Journal 24(1), p. 77-83, pubmed, doi:10.1177/197140091102400112

Teresa Murta, Patrícia Figueiredo, Alberto Leal (2011) EEG-fMRI measures of functional brain connectivity in epilepsy, 1st Portuguese Meeting in Biomedical Engineering, ENBENG 2011, url, doi:10.1109/ENBENG.2011.6026094

Carlos Cabral, Margarida Silveira, Patricia Figueiredo (2011) Decoding visual stimuli using classifier ensembles with optimized feature selection, Proceedings - International Symposium on Biomedical Imaging, p. 300-304, doi:10.1109/ISBI.2011.5872410

Nuno Santos, João Sanches, Patricia Figueiredo (2011) Spatial priors for perfusion and transit time estimation in PASL-MRI, Proceedings - International Symposium on Biomedical Imaging, p. 791-794, IEEE, url, doi:10.1109/ISBI.2011.5872524

David Afonso, Patricia Figueiredo, J Miguel Sanches (2011) Automatic HyperParameter Estimation in fMRI, Pattern Recognition and Image Analysis: 5th Iberian Conference, Ibpria 2011 6669, p. 117-125

João P.F. Jorge, P Figueiredo, W Van Der Zwaag, J P Marques (2011) Sources of signal fluctuations in functional magnetic resonance imaging at 7 Tesla, 1st Portuguese Meeting in Biomedical Engineering, ENBENG 2011, url, doi:10.1109/ENBENG.2011.6026092

Carlos Cabral, Margarida Silveira, Patricia Figueiredo (2011) Decoding visual brain states from fMRI using an ensemble of classifiers, Pattern Recognition, p. 1-11, Elsevier, url, doi:10.1016/j.patcog.2011.04.015

2010

C Silvestre, P Figueiredo, P Rosa (2010) Multiple-Model Set-Valued Observers: A new tool for HRF model selection in fMRI, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10, p. 5704-5707, url, doi:10.1109/IEMBS.2010.5627877

Nuno Santos, João Sanches, Patrícia Figueiredo (2010) Bayesian optimization of perfusion and transit time estimation in PASL-MRI, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10 2010, p. 4284-4287, pubmed, doi:10.1109/IEMBS.2010.5626174

João Sanches, Inês Sousa, Patrícia Figueiredo (2010) Bayesian Fisher information criterion for sampling optimization in ASL-MRI, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings, p. 880-883, url, doi:10.1109/ISBI.2010.5490127

C Silvestre, P Figueiredo, P Rosa (2010) On the distinguishability of HRF models in fMRI., Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, url

Margarida Silveira, Patricia Figueiredo (2010) Joint fMRI brain activation detection and segmentation using level sets, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10, p. 5708-5711, url, doi:10.1109/IEMBS.2010.5627878

2009

C. Isidoro, N. Fachada, F. Barata, A. Rosa (2009) Artificial life model of dengue host-vector disease propagation, IJCCI 2009 - International Joint Conference on Computational Intelligence, Proceedings

C. Isidoro, N. Fachada, F. Barata, A. Rosa (2009) Agent-based model of aedes aegypti population dynamics, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5816 LNAI, doi:10.1007/978-3-642-04686-5_5

N. Fachada, V.V. Lopes, A. Rosa (2009) Simulating antigenic drift and shift in influenza A, Proceedings of the ACM Symposium on Applied Computing, doi:10.1145/1529282.1529744

Jos?? P. Marques, Jos?? Rebola, Patr??cia Figueiredo, Alda Pinto, Francisco Sales, Miguel Castelo-Branco (2009) ICA decomposition of EEG signal for fMRI processing in epilepsy, Human Brain Mapping 30(9), p. 2986-2996, doi:10.1002/hbm.20723

2008

N. Fachada, V.V. Lopes, A. Rosa (2008) Simulation of immune system response to bacterial challenge, Proceedings of the 22nd annual European Simulation and Modelling Conference ESM'2008, Cyrille Bertelle, Aladdin Ayesh (ed.), p. 252-257, Le Havre, France: EUROSIS-ETI, pdf

P Figueiredo, J Sanches (2008) Sampling strategy for perfusion quantification using PASL-MRI, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI, url, doi:10.1109/ISBI.2008.4541061

P Figueiredo, I Santana, J Teixeira, C Cunha, E Machado, F Sales, E Almeida, M Castelo-Branco (2008) Adaptive visual memory reorganization in right medial temporal lobe epilepsy, Epilepsia, url, doi:10.1111/j.1528-1167.2008.01629.x

2007

Nuno Fachada, Vitor V. Lopes, Agostinho C. Rosa (2007) Agent Based Modelling and Simulation of the Immune System: a Review, New Trends in Artificial Intelligence. Proceedings of the 13th Portuguese Conference on Artificial Intelligence, EPIA 2007, José Neves, Manuel F. Santos, José M. Machado (ed.), p. 300-315, Guimarães, Portugal: APPIA, url

2006

M Castelo-Branco, M Mendes, M F Silva, C Januário, E Machado, A Pinto, P Figueiredo, A Freire (2006) Specific retinotopically based magnocellular impairment in a patient with medial visual dorsal stream damage, Neuropsychologia, url, doi:10.1016/j.neuropsychologia.2005.05.005

Nuno Santos, João Sanches, Patrícia Figueiredo (2006) SPATIAL PRIORS FOR PERFUSION AND TRANSIT TIME ESTIMATION IN PASL-MRI Institute for Systems and Robotics / Instituto Superior Técnico Healthcare Sector , Siemens S . A ., Portugal, p. 1-4

2005

Patricia M. Figueiredo, Stuart Clare, Peter Jezzard (2005) Quantitative perfusion measurements using pulsed arterial spin labeling: Effects of large region-of-interest analysis, Journal of Magnetic Resonance Imaging 21(6), p. 676-682, doi:10.1002/jmri.20329

Teddy Tjandra, Jonathan C W Brooks, Patricia Figueiredo, Richard Wise, Paul M. Matthews, Irene Tracey (2005) Quantitative assessment of the reproducibility of functional activation measured with BOLD and MR perfusion imaging: Implications for clinical trial design, NeuroImage 27(2), p. 393-401

2004

Patrícia Figueiredo, P O R Ressonância Magnética (2004) O cérebro humano em actividade : investigação imagiológica por ressonância magnética funcional 31, p. 8-12